# Makefile.in generated by automake 1.6.1 from Makefile.am.
# doc/programs/text/Makefile.  Generated from Makefile.in by configure.

# Copyright 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002
# Free Software Foundation, Inc.
# This Makefile.in is free software; the Free Software Foundation
# gives unlimited permission to copy and/or distribute it,
# with or without modifications, as long as this notice is preserved.

# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
# PARTICULAR PURPOSE.


SHELL = /bin/sh

srcdir = .
top_srcdir = ../../..

prefix = /usr/local
exec_prefix = ${prefix}

bindir = ${exec_prefix}/bin
sbindir = ${exec_prefix}/sbin
libexecdir = ${exec_prefix}/libexec
datadir = ${prefix}/share
sysconfdir = ${prefix}/etc
sharedstatedir = ${prefix}/com
localstatedir = ${prefix}/var
libdir = ${exec_prefix}/lib
infodir = ${prefix}/info
mandir = ${prefix}/man
includedir = ${prefix}/include
oldincludedir = /usr/include
pkglibdir = $(libdir)/EMBOSS
pkgincludedir = $(includedir)/EMBOSS
top_builddir = ../../..

ACLOCAL = ${SHELL} /m2/emboss/emboss/missing --run aclocal-1.6
AUTOCONF = ${SHELL} /m2/emboss/emboss/missing --run autoconf
AUTOMAKE = ${SHELL} /m2/emboss/emboss/missing --run automake-1.6
AUTOHEADER = ${SHELL} /m2/emboss/emboss/missing --run autoheader

am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
INSTALL = /usr/bin/install -c
INSTALL_PROGRAM = ${INSTALL}
INSTALL_DATA = ${INSTALL} -m 644
install_sh_DATA = $(install_sh) -c -m 644
install_sh_PROGRAM = $(install_sh) -c
INSTALL_SCRIPT = ${INSTALL}
INSTALL_HEADER = $(INSTALL_DATA)
transform = s,x,x,
NORMAL_INSTALL = :
PRE_INSTALL = :
POST_INSTALL = :
NORMAL_UNINSTALL = :
PRE_UNINSTALL = :
POST_UNINSTALL = :
host_alias = 
host_triplet = i686-pc-linux-gnu

EXEEXT = 
OBJEXT = o
PATH_SEPARATOR = :

pkgdatadir = $(prefix)/share/$(PACKAGE)/doc/programs/text
AJAX_FIXED_ROOT = \"/m2/emboss/emboss/emboss\"
AMTAR = ${SHELL} /m2/emboss/emboss/missing --run tar
AS = @AS@
AWK = gawk
CC = gcc
CPP = gcc -E
DEPDIR = .deps
DLLTOOL = @DLLTOOL@
ECHO = echo
EMBOSS_TOP = /m2/emboss/emboss
INSTALL_STRIP_PROGRAM = ${SHELL} $(install_sh) -c -s
ISAIXIA64 = 
JAVA_OK = 
LIBTOOL = $(SHELL) $(top_builddir)/libtool
LN_S = ln -s
NEEDAJAX = 
OBJDUMP = @OBJDUMP@
PACKAGE = EMBOSS
RANLIB = ranlib
STRIP = strip
VERSION = 2.4.1
XLIB =  -L/usr/X11R6/lib -L/usr/X11R6/lib -lX11 
X_CFLAGS =  -I/usr/X11R6/include -I/usr/X11R6/include
X_EXTRA_LIBS = 
X_LIBS =  -L/usr/X11R6/lib -L/usr/X11R6/lib
X_PRE_LIBS =  -lSM -lICE -lSM -lICE
am__include = include
am__quote = 
havejavac = 
install_sh = /m2/emboss/emboss/install-sh
pkgdata_DATA = SITE-DIRECTED.txt abiview.txt ajtest.txt alignwrap.txt \
               antigenic.txt backtranseq.txt banana.txt biosed.txt \
               btwisted.txt cai.txt chaos.txt charge.txt checktrans.txt \
               chips.txt cirdna.txt clique.txt codcmp.txt coderet.txt \
               complex.txt compseq.txt cons.txt consense.txt contacts.txt \
               contml.txt contrast.txt cpgplot.txt cpgreport.txt cusp.txt \
               cutgextract.txt cutseq.txt dan.txt dbiblast.txt dbifasta.txt \
               dbiflat.txt dbigcg.txt degapseq.txt descseq.txt dichet.txt \
               diffseq.txt digest.txt distmat.txt dnacomp.txt dnadist.txt \
               dnainvar.txt dnaml.txt dnamlk.txt dnapars.txt dnapenny.txt \
               dollop.txt dolpenny.txt domainer.txt dotmatcher.txt \
               dotpath.txt dottup.txt dreg.txt eclique.txt econsense.txt \
               econtml.txt econtrast.txt ednacomp.txt ednadist.txt \
               ednainvar.txt ednaml.txt ednamlk.txt ednapars.txt \
               ednapenny.txt edollop.txt edolpenny.txt efactor.txt \
               efitch.txt egendist.txt einverted.txt ekitsch.txt \
               embossdata.txt embossversion.txt emix.txt emma.txt \
               emowse.txt eneighbor.txt entret.txt epenny.txt eprimer3.txt \
               eprotdist.txt eprotpars.txt equicktandem.txt erestml.txt \
               eseqboot.txt est2genome.txt etandem.txt extractfeat.txt \
               extractseq.txt factor.txt findkm.txt fitch.txt freak.txt \
               fuzznuc.txt fuzzpro.txt fuzztran.txt garnier.txt geecee.txt \
               gendist.txt getorf.txt helixturnhelix.txt hmoment.txt \
               iep.txt infoalign.txt infoseq.txt interface.txt isochore.txt

pkgdata2_DATA = jembossctl.txt kitsch.txt lindna.txt listor.txt marscan.txt \
               maskfeat.txt maskseq.txt matcher.txt megamerger.txt \
               merger.txt mix.txt msbar.txt mse.txt mwfilter.txt needle.txt \
               neighbor.txt newcpgreport.txt newcpgseek.txt newseq.txt \
               noreturn.txt notseq.txt nrscope.txt nthseq.txt octanol.txt \
               oddcomp.txt palindrome.txt pasteseq.txt patmatdb.txt \
               patmatmotifs.txt pdbtosp.txt penny.txt pepcoil.txt \
               pepinfo.txt pepnet.txt pepstats.txt pepwheel.txt \
               pepwindow.txt pepwindowall.txt plotcon.txt plotorf.txt \
               polydot.txt preg.txt prettyplot.txt prettyseq.txt \
               primersearch.txt printsextract.txt profit.txt prophecy.txt \
               prophet.txt prosextract.txt protdist.txt pscan.txt \
               psiblasts.txt rebaseextract.txt recode.txt recoder.txt \
               redata.txt remap.txt restml.txt restover.txt restrict.txt \
               revseq.txt scopalign.txt scope.txt scopparse.txt seealso.txt \
               seqboot.txt seqmatchall.txt seqnr.txt seqret.txt \
               seqretall.txt seqretallfeat.txt seqretfeat.txt seqretset.txt \
               seqretsplit.txt seqsort.txt showalign.txt showdb.txt \
               showfeat.txt showorf.txt showseq.txt shuffleseq.txt \
               sigcleave.txt siggen.txt sigscan.txt silent.txt splitter.txt \
               stamps.txt stretcher.txt stssearch.txt supermatcher.txt \
               swissparse.txt syco.txt textsearch.txt tfextract.txt tfm.txt \
               tfscan.txt tmap.txt topo.txt tranalign.txt transeq.txt \
               trimest.txt trimseq.txt union.txt vectorstrip.txt water.txt \
               whichdb.txt wobble.txt wordcount.txt wordmatch.txt \
               wossname.txt yank.txt

pkgdata2dir = $(prefix)/share/$(PACKAGE)/doc/programs/text
subdir = doc/programs/text
mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
CONFIG_CLEAN_FILES =
DIST_SOURCES =
DATA = $(pkgdata_DATA) $(pkgdata2_DATA)

DIST_COMMON = Makefile.am Makefile.in
all: all-am

.SUFFIXES:
$(srcdir)/Makefile.in:  Makefile.am  $(top_srcdir)/configure.in $(ACLOCAL_M4)
	cd $(top_srcdir) && \
	  $(AUTOMAKE) --gnu  doc/programs/text/Makefile
Makefile:  $(srcdir)/Makefile.in  $(top_builddir)/config.status
	cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)

mostlyclean-libtool:
	-rm -f *.lo

clean-libtool:
	-rm -rf .libs _libs

distclean-libtool:
	-rm -f libtool
uninstall-info-am:
pkgdataDATA_INSTALL = $(INSTALL_DATA)
install-pkgdataDATA: $(pkgdata_DATA)
	@$(NORMAL_INSTALL)
	$(mkinstalldirs) $(DESTDIR)$(pkgdatadir)
	@list='$(pkgdata_DATA)'; for p in $$list; do \
	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
	  f="`echo $$p | sed -e 's|^.*/||'`"; \
	  echo " $(pkgdataDATA_INSTALL) $$d$$p $(DESTDIR)$(pkgdatadir)/$$f"; \
	  $(pkgdataDATA_INSTALL) $$d$$p $(DESTDIR)$(pkgdatadir)/$$f; \
	done

uninstall-pkgdataDATA:
	@$(NORMAL_UNINSTALL)
	@list='$(pkgdata_DATA)'; for p in $$list; do \
	  f="`echo $$p | sed -e 's|^.*/||'`"; \
	  echo " rm -f $(DESTDIR)$(pkgdatadir)/$$f"; \
	  rm -f $(DESTDIR)$(pkgdatadir)/$$f; \
	done
pkgdata2DATA_INSTALL = $(INSTALL_DATA)
install-pkgdata2DATA: $(pkgdata2_DATA)
	@$(NORMAL_INSTALL)
	$(mkinstalldirs) $(DESTDIR)$(pkgdata2dir)
	@list='$(pkgdata2_DATA)'; for p in $$list; do \
	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
	  f="`echo $$p | sed -e 's|^.*/||'`"; \
	  echo " $(pkgdata2DATA_INSTALL) $$d$$p $(DESTDIR)$(pkgdata2dir)/$$f"; \
	  $(pkgdata2DATA_INSTALL) $$d$$p $(DESTDIR)$(pkgdata2dir)/$$f; \
	done

uninstall-pkgdata2DATA:
	@$(NORMAL_UNINSTALL)
	@list='$(pkgdata2_DATA)'; for p in $$list; do \
	  f="`echo $$p | sed -e 's|^.*/||'`"; \
	  echo " rm -f $(DESTDIR)$(pkgdata2dir)/$$f"; \
	  rm -f $(DESTDIR)$(pkgdata2dir)/$$f; \
	done
tags: TAGS
TAGS:

DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)

top_distdir = ../../..
distdir = $(top_distdir)/$(PACKAGE)-$(VERSION)

distdir: $(DISTFILES)
	@for file in $(DISTFILES); do \
	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
	  dir=`echo "$$file" | sed -e 's,/[^/]*$$,,'`; \
	  if test "$$dir" != "$$file" && test "$$dir" != "."; then \
	    dir="/$$dir"; \
	    $(mkinstalldirs) "$(distdir)$$dir"; \
	  else \
	    dir=''; \
	  fi; \
	  if test -d $$d/$$file; then \
	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
	    fi; \
	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
	  else \
	    test -f $(distdir)/$$file \
	    || cp -p $$d/$$file $(distdir)/$$file \
	    || exit 1; \
	  fi; \
	done
check-am: all-am
check: check-am
all-am: Makefile $(DATA)

installdirs:
	$(mkinstalldirs) $(DESTDIR)$(pkgdatadir) $(DESTDIR)$(pkgdata2dir)

install: install-am
install-exec: install-exec-am
install-data: install-data-am
uninstall: uninstall-am

install-am: all-am
	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am

installcheck: installcheck-am
install-strip:
	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
	  INSTALL_STRIP_FLAG=-s \
	  `test -z '$(STRIP)' || \
	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
mostlyclean-generic:

clean-generic:

distclean-generic:
	-rm -f Makefile $(CONFIG_CLEAN_FILES) stamp-h stamp-h[0-9]*

maintainer-clean-generic:
	@echo "This command is intended for maintainers to use"
	@echo "it deletes files that may require special tools to rebuild."
clean: clean-am

clean-am: clean-generic clean-libtool mostlyclean-am

distclean: distclean-am

distclean-am: clean-am distclean-generic distclean-libtool

dvi: dvi-am

dvi-am:

info: info-am

info-am:

install-data-am: install-pkgdata2DATA install-pkgdataDATA

install-exec-am:

install-info: install-info-am

install-man:

installcheck-am:

maintainer-clean: maintainer-clean-am

maintainer-clean-am: distclean-am maintainer-clean-generic

mostlyclean: mostlyclean-am

mostlyclean-am: mostlyclean-generic mostlyclean-libtool

uninstall-am: uninstall-info-am uninstall-pkgdata2DATA \
	uninstall-pkgdataDATA

.PHONY: all all-am check check-am clean clean-generic clean-libtool \
	distclean distclean-generic distclean-libtool distdir dvi \
	dvi-am info info-am install install-am install-data \
	install-data-am install-exec install-exec-am install-info \
	install-info-am install-man install-pkgdata2DATA \
	install-pkgdataDATA install-strip installcheck installcheck-am \
	installdirs maintainer-clean maintainer-clean-generic \
	mostlyclean mostlyclean-generic mostlyclean-libtool uninstall \
	uninstall-am uninstall-info-am uninstall-pkgdata2DATA \
	uninstall-pkgdataDATA

# Tell versions [3.59,3.63) of GNU make to not export all variables.
# Otherwise a system limit (for SysV at least) may be exceeded.
.NOEXPORT:
