add_bends(const Ref< SetIntCoor > &list, BitArrayLTri &bonds, Molecule &m) (defined in sc::IntCoorGen) | sc::IntCoorGen | [protected] |
add_bonds(const Ref< SetIntCoor > &list, BitArrayLTri &bonds, Molecule &m) (defined in sc::IntCoorGen) | sc::IntCoorGen | [protected] |
add_out(const Ref< SetIntCoor > &list, BitArrayLTri &bonds, Molecule &m) (defined in sc::IntCoorGen) | sc::IntCoorGen | [protected] |
add_tors(const Ref< SetIntCoor > &list, BitArrayLTri &bonds, Molecule &m) (defined in sc::IntCoorGen) | sc::IntCoorGen | [protected] |
class_desc() const | sc::DescribedClass | |
class_name() const | sc::DescribedClass | |
class_version() const | sc::DescribedClass | |
cos_ijk(Molecule &m, int i, int j, int k) (defined in sc::IntCoorGen) | sc::IntCoorGen | [protected] |
dereference() | sc::RefCount | [inline] |
DescribedClass() (defined in sc::DescribedClass) | sc::DescribedClass | |
DescribedClass(const DescribedClass &) (defined in sc::DescribedClass) | sc::DescribedClass | |
dir_restore_state(StateIn &si, const char *objectname, const char *keyword=0) (defined in sc::SavableState) | sc::SavableState | [static] |
extra_bonds_ (defined in sc::IntCoorGen) | sc::IntCoorGen | [protected] |
generate(const Ref< SetIntCoor > &) | sc::IntCoorGen | [virtual] |
hterminal(Molecule &m, BitArrayLTri &bonds, int i) (defined in sc::IntCoorGen) | sc::IntCoorGen | [protected] |
identifier() | sc::Identity | [inline] |
init_constants() (defined in sc::IntCoorGen) | sc::IntCoorGen | [protected] |
IntCoorGen(const Ref< Molecule > &, int nextra=0, int *extra=0) | sc::IntCoorGen | |
IntCoorGen(const Ref< KeyVal > &) | sc::IntCoorGen | |
IntCoorGen(StateIn &) (defined in sc::IntCoorGen) | sc::IntCoorGen | |
key_restore_state(StateIn &si, const char *keyword) | sc::SavableState | [static] |
linear_bend_thres_ (defined in sc::IntCoorGen) | sc::IntCoorGen | [protected] |
linear_bends_ (defined in sc::IntCoorGen) | sc::IntCoorGen | [protected] |
linear_lbends_ (defined in sc::IntCoorGen) | sc::IntCoorGen | [protected] |
linear_stors_ (defined in sc::IntCoorGen) | sc::IntCoorGen | [protected] |
linear_tors_ (defined in sc::IntCoorGen) | sc::IntCoorGen | [protected] |
linear_tors_thres_ (defined in sc::IntCoorGen) | sc::IntCoorGen | [protected] |
lock_ptr() const | sc::RefCount | |
managed() const (defined in sc::RefCount) | sc::RefCount | [inline] |
managed() const | sc::RefCount | [inline] |
molecule_ (defined in sc::IntCoorGen) | sc::IntCoorGen | [protected] |
nearest_contact(int i, Molecule &m) (defined in sc::IntCoorGen) | sc::IntCoorGen | [protected] |
nextra_bonds_ (defined in sc::IntCoorGen) | sc::IntCoorGen | [protected] |
nreference() const | sc::RefCount | [inline] |
operator=(const SavableState &) (defined in sc::SavableState) | sc::SavableState | |
operator=(const DescribedClass &) (defined in sc::DescribedClass) | sc::DescribedClass | |
operator=(const RefCount &) (defined in sc::RefCount) | sc::RefCount | [inline, protected] |
print(std::ostream &out=ExEnv::out0()) const | sc::IntCoorGen | [virtual] |
radius_scale_factor_ (defined in sc::IntCoorGen) | sc::IntCoorGen | [protected] |
RefCount() (defined in sc::RefCount) | sc::RefCount | [inline, protected] |
RefCount(const RefCount &) (defined in sc::RefCount) | sc::RefCount | [inline, protected] |
reference() | sc::RefCount | [inline] |
restore_state(StateIn &si) | sc::SavableState | [static] |
SavableState() (defined in sc::SavableState) | sc::SavableState | [protected] |
SavableState(const SavableState &) (defined in sc::SavableState) | sc::SavableState | [protected] |
SavableState(StateIn &) | sc::SavableState | [protected] |
save_data_state(StateOut &) | sc::IntCoorGen | [virtual] |
save_object_state(StateOut &) | sc::SavableState | |
save_state(StateOut &) | sc::SavableState | |
save_state(SavableState *s, StateOut &) (defined in sc::SavableState) | sc::SavableState | [static] |
save_vbase_state(StateOut &) | sc::SavableState | [virtual] |
unlock_ptr() const | sc::RefCount | |
unmanage() | sc::RefCount | [inline] |
use_locks(bool inVal) | sc::RefCount | |
~DescribedClass() (defined in sc::DescribedClass) | sc::DescribedClass | [virtual] |
~Identity() (defined in sc::Identity) | sc::Identity | [virtual] |
~IntCoorGen() (defined in sc::IntCoorGen) | sc::IntCoorGen | |
~RefCount() (defined in sc::RefCount) | sc::RefCount | [virtual] |
~SavableState() (defined in sc::SavableState) | sc::SavableState | [virtual] |