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sc::RedundMolecularCoor Member List This is the complete list of members for sc::RedundMolecularCoor, including all inherited members. all_ (defined in sc::IntMolecularCoor) sc::IntMolecularCoor [protected] all_to_cartesian(const Ref< Molecule > &, RefSCVector &internal) sc::IntMolecularCoor [virtual] all_to_internal(const Ref< Molecule > &, RefSCVector &internal) sc::IntMolecularCoor [virtual] bends_ (defined in sc::IntMolecularCoor) sc::IntMolecularCoor [protected] bonds_ (defined in sc::IntMolecularCoor) sc::IntMolecularCoor [protected] cartesian_tolerance_ (defined in sc::IntMolecularCoor) sc::IntMolecularCoor [protected] change_coordinates() sc::MolecularCoor [virtual] class_desc() const sc::DescribedClass class_name() const sc::DescribedClass class_version() const sc::DescribedClass constant_ (defined in sc::IntMolecularCoor) sc::IntMolecularCoor [protected] coordinate_tolerance_ (defined in sc::IntMolecularCoor) sc::IntMolecularCoor [protected] debug_ (defined in sc::MolecularCoor) sc::MolecularCoor [protected] decouple_bends_ (defined in sc::IntMolecularCoor) sc::IntMolecularCoor [protected] decouple_bonds_ (defined in sc::IntMolecularCoor) sc::IntMolecularCoor [protected] dereference() sc::RefCount [inline] DescribedClass() (defined in sc::DescribedClass) sc::DescribedClass DescribedClass(const DescribedClass &) (defined in sc::DescribedClass) sc::DescribedClass dim() sc::IntMolecularCoor [virtual] dim_ (defined in sc::IntMolecularCoor) sc::IntMolecularCoor [protected] dim_natom3() sc::MolecularCoor [inline] dir_restore_state(StateIn &si, const char *objectname, const char *keyword=0) (defined in sc::SavableState) sc::SavableState [static] dnatom3_ (defined in sc::MolecularCoor) sc::MolecularCoor [protected] dvc_ (defined in sc::IntMolecularCoor) sc::IntMolecularCoor [protected] extra_bonds_ (defined in sc::IntMolecularCoor) sc::IntMolecularCoor [protected] extras_ (defined in sc::IntMolecularCoor) sc::IntMolecularCoor [protected] fixed_ (defined in sc::IntMolecularCoor) sc::IntMolecularCoor [protected] followed_ (defined in sc::IntMolecularCoor) sc::IntMolecularCoor [protected] form_coordinates(int keep_variable=0) sc::RedundMolecularCoor [virtual] form_K_matrix(RefSCDimension &dredundant, RefSCDimension &dfixed, RefSCMatrix &K, int *&is_totally_symmetric) (defined in sc::IntMolecularCoor) sc::IntMolecularCoor [protected] form_print_constant_ (defined in sc::IntMolecularCoor) sc::IntMolecularCoor [protected] form_print_molecule_ (defined in sc::IntMolecularCoor) sc::IntMolecularCoor [protected] form_print_simples_ (defined in sc::IntMolecularCoor) sc::IntMolecularCoor [protected] form_print_variable_ (defined in sc::IntMolecularCoor) sc::IntMolecularCoor [protected] generator_ (defined in sc::IntMolecularCoor) sc::IntMolecularCoor [protected] given_fixed_values_ (defined in sc::IntMolecularCoor) sc::IntMolecularCoor [protected] guess_hessian(RefSymmSCMatrix &hessian) sc::RedundMolecularCoor [virtual] identifier() sc::Identity [inline] init() sc::IntMolecularCoor [protected, virtual] IntMolecularCoor(StateIn &) (defined in sc::IntMolecularCoor) sc::IntMolecularCoor IntMolecularCoor(Ref< Molecule > &mol) (defined in sc::IntMolecularCoor) sc::IntMolecularCoor IntMolecularCoor(const Ref< KeyVal > &) sc::IntMolecularCoor inverse_hessian(RefSymmSCMatrix &) sc::RedundMolecularCoor [virtual] key_restore_state(StateIn &si, const char *keyword) sc::SavableState [static] lock_ptr() const sc::RefCount managed() const (defined in sc::RefCount) sc::RefCount [inline] managed() const sc::RefCount [inline] matrixkit() const (defined in sc::MolecularCoor) sc::MolecularCoor [inline] matrixkit_ (defined in sc::MolecularCoor) sc::MolecularCoor [protected] max_update_disp_ (defined in sc::IntMolecularCoor) sc::IntMolecularCoor [protected] max_update_steps_ (defined in sc::IntMolecularCoor) sc::IntMolecularCoor [protected] MolecularCoor(Ref< Molecule > &) (defined in sc::MolecularCoor) sc::MolecularCoor MolecularCoor(StateIn &) (defined in sc::MolecularCoor) sc::MolecularCoor MolecularCoor(const Ref< KeyVal > &) sc::MolecularCoor molecule() const sc::MolecularCoor [inline] molecule_ (defined in sc::MolecularCoor) sc::MolecularCoor [protected] nconstrained() sc::IntMolecularCoor [virtual] new_coords() sc::IntMolecularCoor [protected, virtual] nextra_bonds_ (defined in sc::IntMolecularCoor) sc::IntMolecularCoor [protected] nreference() const sc::RefCount [inline] only_totally_symmetric_ (defined in sc::IntMolecularCoor) sc::IntMolecularCoor [protected] operator=(const SavableState &) (defined in sc::SavableState) sc::SavableState operator=(const DescribedClass &) (defined in sc::DescribedClass) sc::DescribedClass operator=(const RefCount &) (defined in sc::RefCount) sc::RefCount [inline, protected] outs_ (defined in sc::IntMolecularCoor) sc::IntMolecularCoor [protected] print(std::ostream &=ExEnv::out0()) const sc::IntMolecularCoor [virtual] print_constant(std::ostream &=ExEnv::out0()) const (defined in sc::IntMolecularCoor) sc::IntMolecularCoor [virtual] print_simples(std::ostream &=ExEnv::out0()) const (defined in sc::IntMolecularCoor) sc::IntMolecularCoor [virtual] print_variable(std::ostream &=ExEnv::out0()) const (defined in sc::IntMolecularCoor) sc::IntMolecularCoor [virtual] read_keyval(const Ref< KeyVal > &) sc::IntMolecularCoor [protected, virtual] RedundMolecularCoor(Ref< Molecule > &mol) (defined in sc::RedundMolecularCoor) sc::RedundMolecularCoor RedundMolecularCoor(StateIn &) (defined in sc::RedundMolecularCoor) sc::RedundMolecularCoor RedundMolecularCoor(const Ref< KeyVal > &) sc::RedundMolecularCoor RefCount() (defined in sc::RefCount) sc::RefCount [inline, protected] RefCount(const RefCount &) (defined in sc::RefCount) sc::RefCount [inline, protected] reference() sc::RefCount [inline] restore_state(StateIn &si) sc::SavableState [static] SavableState() (defined in sc::SavableState) sc::SavableState [protected] SavableState(const SavableState &) (defined in sc::SavableState) sc::SavableState [protected] SavableState(StateIn &) sc::SavableState [protected] save_data_state(StateOut &) sc::RedundMolecularCoor [virtual] save_object_state(StateOut &) sc::SavableState save_state(StateOut &) sc::SavableState save_state(SavableState *s, StateOut &) (defined in sc::SavableState) sc::SavableState [static] save_vbase_state(StateOut &) sc::SavableState [virtual] scale_bends_ (defined in sc::IntMolecularCoor) sc::IntMolecularCoor [protected] scale_bonds_ (defined in sc::IntMolecularCoor) sc::IntMolecularCoor [protected] scale_outs_ (defined in sc::IntMolecularCoor) sc::IntMolecularCoor [protected] scale_tors_ (defined in sc::IntMolecularCoor) sc::IntMolecularCoor [protected] simple_tolerance_ (defined in sc::IntMolecularCoor) sc::IntMolecularCoor [protected] symmetry_tolerance_ (defined in sc::IntMolecularCoor) sc::IntMolecularCoor [protected] to_cartesian(const Ref< Molecule > &, const RefSCVector &internal) (defined in sc::IntMolecularCoor) sc::IntMolecularCoor [virtual] to_cartesian(RefSCVector &cartesian, RefSCVector &internal) sc::IntMolecularCoor [virtual] to_cartesian(RefSymmSCMatrix &cart, RefSymmSCMatrix &internal) sc::IntMolecularCoor [virtual] sc::MolecularCoor::to_cartesian(const RefSCVector &internal) sc::MolecularCoor to_internal(RefSCVector &internal) sc::IntMolecularCoor [virtual] to_internal(RefSCVector &internal, RefSCVector &cartesian) sc::IntMolecularCoor [virtual] to_internal(RefSymmSCMatrix &internal, RefSymmSCMatrix &cart) sc::IntMolecularCoor [virtual] tors_ (defined in sc::IntMolecularCoor) sc::IntMolecularCoor [protected] unlock_ptr() const sc::RefCount unmanage() sc::RefCount [inline] update_bmat_ (defined in sc::IntMolecularCoor) sc::IntMolecularCoor [protected] use_locks(bool inVal) sc::RefCount variable_ (defined in sc::IntMolecularCoor) sc::IntMolecularCoor [protected] watched_ (defined in sc::IntMolecularCoor) sc::IntMolecularCoor [protected] ~DescribedClass() (defined in sc::DescribedClass) sc::DescribedClass [virtual] ~Identity() (defined in sc::Identity) sc::Identity [virtual] ~IntMolecularCoor() (defined in sc::IntMolecularCoor) sc::IntMolecularCoor [virtual] ~MolecularCoor() (defined in sc::MolecularCoor) sc::MolecularCoor [virtual] ~RedundMolecularCoor() (defined in sc::RedundMolecularCoor) sc::RedundMolecularCoor [virtual] ~RefCount() (defined in sc::RefCount) sc::RefCount [virtual] ~SavableState() (defined in sc::SavableState) sc::SavableState [virtual]