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libGenome Compound List Here are the classes, structs, unions and interfaces with brief descriptions: ExMem gnABISource (GnABISource is not implemented) gnBaseFeature (Features of DNA sequences can be accessed and manipulated using classes derived from gnBaseFeature) gnBaseFilter gnBaseHeader (This class provides a general interface to sequence related headers) gnBaseQualifier (GnBaseQualifier is a general interface to sequence qualifiers) gnBaseSource (GnBaseSource defines a standard interface for derived classes to provide access to file, database, and network sources of genetic data) gnBaseSpec (GnBaseSpec is the class which stores genetic information and is best accessed using gnSequence) gnClone gnCompare gnContigSpec (GnContigSpec is an interface for classes which store contigs, or reads, of DNA or protein sequence) gnDataBaseSource (Not yet implemented) gnDNASequence (GnDNASequence is a special kind of gnSequence which can be used for DNA sequences It sets the default filters and comparators to the DNA filters and comparators) gnDNXSource (GnDNXSource implements the DNX file source) gnException gnExceptionCode gnFASSource (GnFASSource reads and writes FastA files) gnFastTranslator gnFeature (GnFeature stores sequence features in memory) gnFileContig (GnFileContig is used by source classes to track the location of sequence data on disk) gnFileSource (GnFileSource is a standard interface to all file based sources of genetic information) gnFilter gnFragmentSpec (GnFragmentSpec contains a list of specs which make up a sequence fragment) gnGBKSource (GnGBKSource is a GenBank sequence file reader) gnGenomeSpec (This class contains references to the sequence data, annotation, and other related header data for an organism's genome) gnLocation (This class is used to store sequence locations) gnMultiSpec (This class defines an interface for specs which have multiple subspecs containing sequence data) gnProteinSequence (GnProteinSequence is a special kind of gnSequence which can be used for RNA sequences It sets the default filters and comparators to the RNA filters and comparators) gnRAWSource (GnRAWSource reads raw sequence data from a text file) gnRNASequence (GnRNASequence is a special kind of gnSequence which can be used for RNA sequences It sets the default filters and comparators to the RNA filters and comparators) gnSEQSource (GnSEQSource is a SEQ file reader) gnSequence (GnSequence is the most commonly used class in libGenome) gnSourceFactory (GnSourceFactory is the middle man when acessing a sequence data source It tracks all data sources currently in use, ensuring that a particular data source is only opened and parsed once) gnSourceHeader (GnSourceHeader is used to store a sequence header which resides in another source) gnSourceQualifier (GnSourceQualifier is used to store a sequence qualifier which resides in another source) gnSourceSpec (GnSourceSpec stores sequence and annotation data from another source) gnStringHeader (GnStringHeader stores sequence related header information in memory) gnStringQualifier (GnStringQualifier stores a sequence qualifier in memory) gnStringSpec (GnStringSpec stores a sequence and annotation data in memory) gnTranslator (Facilitates the translation of ambiguous DNA and RNA sequences to protein sequence)