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gnFileContig Member List This is the complete list of members for gnFileContig, including all inherited members. AddToSeqLength(const gnSeqI len) [inline] Clear() Clone() const [inline, virtual] GetFileLength() const [inline] GetFileStartEnd() const [inline] GetName() const [inline] GetRepeatSeqGapSize() const [inline] GetSectLength(gnContigSection i) const [inline] GetSectStartEnd(const gnContigSection i) const [inline] GetSeqLength() const [inline] gnClone() [inline] gnFileContig() gnFileContig(string nameStr, const uint64 pos, const uint64 len) gnFileContig(const gnFileContig &fc) HasRepeatSeqGap() const [inline] m_fileStartEnd [private] m_name [private] m_repeatSeqGap [private] m_repeatSeqGapSize [private] m_seqLength [private] m_startEndArray [private] SetFileEnd(const uint64 e) [inline] SetFileStart(const uint64 s) [inline] SetFileStartEnd(const pair< uint64, uint64 > se) [inline] SetName(string nameStr) [inline] SetRepeatGapSize(const uint64 gapSize) SetRepeatSeqGap(const boolean rsg) [inline] SetRepeatSeqGapSize(const pair< uint64, uint64 > rsgSize) [inline] SetRepeatSeqSize(const uint64 seqSize) SetSectEnd(const gnContigSection i, const uint64 e) [inline] SetSectStart(const gnContigSection i, const uint64 s) [inline] SetSectStartEnd(const gnContigSection i, const pair< uint64, uint64 > se) [inline] SetSeqLength(const gnSeqI len) [inline] ~gnClone() [inline, virtual] ~gnFileContig()