gnBaseFilter.h Source File

00001 
00002 // File:            gnBaseFilter.h
00003 // Purpose:         Generic filter interface
00004 // Description:     Filters sequences, translates, reverse complement, converts
00005 //                   additions, etc.
00006 // Changes:        
00007 // Version:         libGenome 0.1.0 
00008 // Author:          Aaron Darling 
00009 // Last Edited:     April 15, 2001, 10:34:50pm 
00010 // Modified by:     
00011 // Copyright:       (c) Aaron Darling 
00012 // Licenses:        Proprietary 
00014 #ifndef _gnBaseFilter_h_
00015 #define _gnBaseFilter_h_
00016 
00017 #include "gn/gnDefs.h"
00018 
00019 #include <string>
00020 #include "gn/gnClone.h"
00021 #include "gn/gnDefs.h"
00022 
00023 class GNDLLEXPORT gnBaseFilter : public gnClone
00024 {
00025 public:         
00026         virtual gnBaseFilter* Clone() const = 0;
00027         
00032         virtual string GetName() const;
00037         virtual void SetName( string name );
00038         
00044         virtual gnSeqC Filter( const gnSeqC ch ) const = 0;
00045 
00052         virtual void Filter( gnSeqC** seq, uint32& len ) const = 0;
00053 
00058         virtual void Filter( string &seq ) const = 0;
00059 
00060 private:
00061         string m_name;
00062 
00063 };//class gnBaseFilter
00064 
00065 inline
00066 string gnBaseFilter::GetName() const
00067 {
00068         return m_name;
00069 }
00070 inline
00071 void gnBaseFilter::SetName( string name )
00072 {
00073         m_name = name;
00074 }
00075 
00076 #endif
00077         // _gnBaseFilter_h_