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gnDefs.h Go to the documentation of this file. // File: gn/gnDefs.h // Purpose: Defines common constants in libGenome. // Description: Defines, consts, typedef etc for libGenome // Rev: A // Author: Aaron Darling // Last Edited: April 15, 2001, 10:34:50pm // Modified by: // Copyright: (c) Aaron Darling // Licenses: Proprietary #ifndef _gnDefs_h_ #define _gnDefs_h_ #ifdef __GNUG__ #pragma interface "gn/gnDefs.h" #endif #include <limits.h> #include <float.h> #include "gn/gnSetup.h" // bool typedef unsigned char boolean; typedef unsigned char int1; // signed typedef signed char int8; typedef signed short int int16; typedef signed int int32; typedef signed long long int64; typedef signed char sint8; typedef signed short int sint16; typedef signed int sint32; typedef signed long int sint64; // unsigned typedef unsigned char uint8; typedef unsigned short int uint16; typedef unsigned int uint32; typedef unsigned long long uint64; // float typedef float float32; typedef double float64; // defines #define TRUE 1 #define FALSE 0 #define PI 3.1415926535897932384626433832795028 #define BOOLEAN_MIN 0 #define BOOLEAN_MAX 1 #define INT0_MIN 0 #define INT1_MAX 1 #define INT8_BYTE_SIZE 1 #define INT16_BYTE_SIZE 2 #define INT32_BYTE_SIZE 4 #define INT64_BYTE_SIZE 8 #define INT8_BIT_SIZE 8 #define INT16_BIT_SIZE 16 #define INT32_BIT_SIZE 32 #define INT64_BIT_SIZE 64 #define UINT8_BYTE_SIZE 1 #define UINT16_BYTE_SIZE 2 #define UINT32_BYTE_SIZE 4 #define UINT64_BYTE_SIZE 8 #define UINT8_BIT_SIZE 8 #define UINT16_BIT_SIZE 16 #define UINT32_BIT_SIZE 32 #define UINT64_BIT_SIZE 64 // limits.h #define INT8_MIN SCHAR_MIN //0x00 #define INT8_MAX SCHAR_MAX //0x7f #define INT16_MIN SHRT_MIN //0x0000 #define INT16_MAX SHRT_MAX //0x7fff #define INT32_MIN INT_MIN //0x0000000 #define INT32_MAX INT_MAX //0x7fffffff #define INT64_MIN LONG_MIN //0x0000000000000000 #define INT64_MAX LONG_MAX //0x7fffffffffffffff #define UINT8_MIN 0 //0x00 #define UINT8_MAX UCHAR_MAX //0xff #define UINT16_MIN 0 //0x0000 #define UINT16_MAX USHRT_MAX //0xffff #define UINT32_MIN 0 //0x00000000 #define UINT32_MAX UINT_MAX //0xffffffff #define UINT64_MIN 0 //0x0000000000000000 #define UINT64_MAX ULONG_MAX //0xffffffffffffffff // float.h #define FLOAT32_MIN FLT_MIN #define FLOAT32_MAX FLT_MAX #define FLOAT32_MIN_EXP FLT_MIN_EXP #define FLOAT32_MAX_EXP FLT_MAX_EXP #define FLOAT32_MIN_10_EXP FLT_MIN_10_EXP #define FLOAT32_MAX_10_EXP FLT_MAX_10_EXP #define FLOAT32_DIGIT FLT_DIG #define FLOAT32_RADIX FLT_RADIX #define FLOAT32_MIN_FRACTION FLT_EPSILON #define FLOAT64_MIN DBL_MIN #define FLOAT64_MAX DBL_MAX #define FLOAT64_MIN_EXP DBL_MIN_EXP #define FLOAT64_MAX_EXP DBL_MAX_EXP #define FLOAT64_MIN_10_EXP DBL_MIN_10_EXP #define FLOAT64_MAX_10_EXP DBL_MAX_10_EXP #define FLOAT64_DIGIT DBL_DIG #define FLOAT64_RADIX DBL_RADIX #define FLOAT64_MIN_FRACTION DBL_EPSILON // Sequence Types typedef char gnSeqC; // Sequence Character typedef uint32 gnSeqI; // Sequence Index #define GNSEQI_ERROR UINT32_MAX // return value #define GNSEQI_END UINT32_MAX // argument value #define GNSEQI_BEGIN UINT32_MIN // argument value #define GNSEQC_NULL 0 #define GNSEQC_MIN INT8_MIN #define GNSEQC_MAX INT8_MAX #define CONTIG_SECTION_SIZE 3 enum gnContigSection{ gnContigHeader = 0, gnContigAnnotation = 1, gnContigSequence = 2 }; enum gnNewlineType{ gnNewlineUnix = 0, gnNewlineWindows = 1, gnNewlineMac = 2 }; static const uint32 ALL_CONTIGS = UINT32_MAX; static const uint32 BUFFER_SIZE = 100000; #endif //_gnDefs_h_