gnStringTools.h Source File

00001 
00002 // File:            gnStringTools.h
00003 // Purpose:         Random string manipulation tools
00004 // Description:     Random string manipulation tools
00005 // Changes:        
00006 // Version:         libGenome 0.1.0 
00007 // Author:          Aaron Darling 
00008 // Last Edited:     April 15, 2001, 10:34:50pm 
00009 // Modified by:     
00010 // Copyright:       (c) Aaron Darling 
00011 // Licenses:        Proprietary 
00013 
00014 #ifndef _gnStringTools_h_
00015 #define _gnStringTools_h_
00016 
00017 #include <iostream>
00018 #include <string>
00019 #include <vector>
00020 #include <stdlib.h>
00021 #include <stdio.h>
00022 #include "gn/gnDefs.h"
00023 
00024 unsigned int removeSpace(string &str);
00025 void removeEndSpace(string &str);
00026 
00027 bool isNewLine(char ch);
00028 bool isWhiteSpace(char ch);
00029 bool isSpace(char ch);
00030 
00031 string uintToString(unsigned int value);
00032 
00033 string ulongToString(unsigned long value);
00034 
00035 string charArrayToString( char *charArray, unsigned int length);
00036 
00037 bool isBase(char base);
00038 void BaseCount(const string& bases, gnSeqI& a_count, gnSeqI& c_count, gnSeqI& g_count, gnSeqI& t_count, gnSeqI& other_count);
00039 
00040 unsigned int parseValue(string &valueString);
00041 int parseUintValue(string &valueString);
00042 int parseIntValue(string &valueString);
00043 
00044 vector< string > tokenizeString( const string &str, char delimiter  = '\t' );
00045 vector< string > tokenizeString( const char* str, unsigned int len, char delimiter = '\t' );
00046 
00047 // **** MAKE SURE YOU STANDARIZE ALL PATHS ****
00048 void standarizePathString( string &oFileName );
00049 
00050 // **** ONLY '/' IS USED for file seperation on all below functions ****
00051 
00052 // make more robust to handle dir and files
00053 string getPathString( string oFileName );
00054 // look for '/' at end
00055 string getFileString( string oFileName );
00056 // look for '/' before '.'
00057 string getExtString( string oFileName );
00058 // look for '/' before '.'
00059 string getFileNoExtString( string oFileName );
00060 
00061 #endif
00062 // gnStringTools_h