Enter your search terms GNU-Darwin Web Submit search form

gnGBKSource.h File Reference #include "gn/gnDefs.h" #include <string> #include <fstream> #include <vector> #include "gn/gnFileSource.h" #include "gn/gnFileContig.h" #include "gn/gnSourceSpec.h" #include "gn/gnSequence.h" Go to the source code of this file. Compounds class   gnGBKSource   gnGBKSource is a GenBank sequence file reader. More... Variables const uint32  SEQ_COLUMN_WIDTH = 80 const uint32  SEQ_HEADER_NAME_LENGTH = 11 const uint32  SEQ_SUBTAG_COLUMN = 5 const uint32  SEQ_LOCUS_CIRCULAR_COLUMN = 43 const uint32  SEQ_LOCUS_NAME_COLUMN = 13 const uint32  SEQ_LOCUS_NAME_LENGTH = 10 const uint32  SEQ_LOCUS_SIZE_LENGTH = 7 const uint32  SEQ_LOCUS_DNATYPE_OFFSET = 33 const uint32  SEQ_LOCUS_DNATYPE_LENGTH = 7 const uint32  SEQ_LOCUS_DIVCODE_OFFSET = 52 const uint32  SEQ_LOCUS_DIVCODE_LENGTH = 3 const uint32  SEQ_LOCUS_DATE_OFFSET = 62 const uint32  SEQ_LOCUS_DATE_LENGTH = 11 const uint32  SEQ_FEATURE_LOC_OFFSET = 21 const uint32  SEQ_BASES_INDEX_END = 9 Variable Documentation const uint32 SEQ_BASES_INDEX_END = 9   Definition at line 41 of file gnGBKSource.h. const uint32 SEQ_COLUMN_WIDTH = 80   Definition at line 27 of file gnGBKSource.h. const uint32 SEQ_FEATURE_LOC_OFFSET = 21   Definition at line 40 of file gnGBKSource.h. const uint32 SEQ_HEADER_NAME_LENGTH = 11   Definition at line 28 of file gnGBKSource.h. const uint32 SEQ_LOCUS_CIRCULAR_COLUMN = 43   Definition at line 30 of file gnGBKSource.h. const uint32 SEQ_LOCUS_DATE_LENGTH = 11   Definition at line 39 of file gnGBKSource.h. const uint32 SEQ_LOCUS_DATE_OFFSET = 62   Definition at line 38 of file gnGBKSource.h. const uint32 SEQ_LOCUS_DIVCODE_LENGTH = 3   Definition at line 37 of file gnGBKSource.h. const uint32 SEQ_LOCUS_DIVCODE_OFFSET = 52   Definition at line 36 of file gnGBKSource.h. const uint32 SEQ_LOCUS_DNATYPE_LENGTH = 7   Definition at line 35 of file gnGBKSource.h. const uint32 SEQ_LOCUS_DNATYPE_OFFSET = 33   Definition at line 34 of file gnGBKSource.h. const uint32 SEQ_LOCUS_NAME_COLUMN = 13   Definition at line 31 of file gnGBKSource.h. const uint32 SEQ_LOCUS_NAME_LENGTH = 10   Definition at line 32 of file gnGBKSource.h. const uint32 SEQ_LOCUS_SIZE_LENGTH = 7   Definition at line 33 of file gnGBKSource.h. const uint32 SEQ_SUBTAG_COLUMN = 5   Definition at line 29 of file gnGBKSource.h.